Download rkill and TDSSkiller and malewarebytes anti malware. Boot up in safe mode without network, run rkill, then run TDSSkiller and then clean Malwarebytes. Sounds like a problem I've had a couple of times with roots. Be careful using TDSSkiller however and be sure not to quarantine or delete any System32 files. Cousin did that like an idiot and completely killed his system and had to do a complete system reformat.
Urgh.. I really hope I didn't pick something up. I am running Spybot SND right now. Seeing if that catches anything. If not I will do the rkill, TDSSkiller and malwarebytes anti malware root. Thank you for your help.