This is where I'm at as well. I think a lot of the Doma storytelling was good, especially in the post-4.0 content. I also never really understood the hate for Lyse. She's not my favorite character but I thought she was alright.
As for Shadowbringers, it gets the acclaim it does because of the later part of the MSQ. I'd say around 77 MSQ is when it starts getting really good and then the conclusion to 5.0 made it one of my favorite stories in games. The first part is just kinda establishing the zones and culture of the First, so it's good but not anything crazy.