Your gear needs help. You have a fishing pole equipped but I think I remember you being .20 over the hitcap the other day. You also are reforging out of Haste on a piece. So first and foremost, that needs to change. I recommend the addon ReforgeLite or the website wowreforge.com (it will do literally all the work for you).
Gems. QG's are like what 300g most nowadays? At the very least put them in your heroic gear. It makes a big difference once you start racking them up.
Spec. Take 2 points out of Furor and put them into Blessing of the Grove. Whenever you want to use Stampeding Roar, shift into bear form, pop enrage, and boom - insta roar.
Thankfully all that is incredibly easy. Now for the hard part, your actual logs. I'll start with Hagara (when you start heroic, you'll need to tweak this strat).
Hagara is all about maximizing dps during feedback and tombs. Start in Lunar, make your way to Solar, and start heading back toward Lunar but DON'T enter it yet. If it's frost phase, dot two of them and then run around spamming Wrath until you get to Lunar (at this point do NOT proc NG with a dot). If it's Lightning, dot up the add while still pre lunar and then quickly get to Lunar (forego dotting completely if you're far away from eclipse). Now that you're in Lunar and you're either finishing off your adds in frost or connecting the lightning in lightning phase, throw 3 shrooms down at Hagara's feet. Then RIGHT before she comes back up, pop treants, hero/lust, Starfall, and use your pot. Insect Swarm, Moonfire and then starfire the hell out of her hoping for some SS procs. Pop shrooms once your Will of Unbinding reaches 10 stacks, but make sure it's still during feedback though. Now quickly get to Solar and place three shrooms down where your guild puts Ice Tombs. Once they come up pop shrooms and Sunfire everything. If they still have a lot of health place three more shrooms down and detonate when off CD (keep dotting everything up and throw a Typhoon out). If they're kinda low, just Typhoon and then Hurricane once. Then just rinse and repeat.
Comparing out logs
http://raidbots.com/comparebot/4ff1e...02000577#buffs the most noticeable difference besides shrooms (guessing you got tombed) is our nukes. My Starfire did 1.5k more dps than yours and my Wrath did 4k more. That would be the first place you should evaluate what you're doing.
I'll do Madness later unless someone else wants to xD