For me it is the fact that every republic class except consular comes out from the wrong hangar when you arrive with your ship at Republic Fleet.
Jedi Knight comes out from the smugglar hangar and so on. Only Consular comes from its own.
Imperial doesnt seem to have this problem, as far as I know...
Ticket to Bioware just gives the answer that they know about it. It has been more than three months, not like it should be a hard bug to fix? Must be some numbers in a sheet somewhere...